Save Raw

Save unprocessed images to a zarr store.

<xarray.DataArray ‘m387ntga1’ (channel: 4, cycle: 4, obj_step: 10, row: 10624, col: 12288)> dask.array<getitem, shape=(4, 4, 10, 10624, 12288), dtype=uint16, chunksize=(1, 1, 1, 10624, 2048), chunktype=numpy.ndarray> Coordinates:

• channel (channel) int64 558 610 687 740
• cycle (cycle) int64 1 2 3 4
• obj_step (obj_step) int64 8847 9082 9317 9552 … 10257 10492 10727 10962 Dimensions without coordinates: row, col Attributes: first_group: 0 machine: Origin scale: 1 overlap: 256 fixed_bg: 0

Raw Image

Input

PySeq2500 experiment config

Output

Zarr store of raw images YAML section summary

Logs

Script Log Dask Performance Report